publications

2023

1. preprint

   Relational persistent homology for multispecies data with application to the tumor microenvironment

   Stolz, Bernadette J., Dhesi, Jagdeep, Bull, Joshua A., Harrington, Heather A., Byrne, Helen M., and Yoon, Iris H. R.

   2023

   Bib HTML

   @article{stolz2023relational,
     title = {Relational persistent homology for multispecies data with application to the tumor microenvironment},
     author = {Stolz, Bernadette J. and Dhesi, Jagdeep and Bull, Joshua A. and Harrington, Heather A. and Byrne, Helen M. and Yoon, Iris H. R.},
     year = {2023},
     abbr = {preprint},
     doi = {10.48550/arXiv.2308.06205},
     html = {https://arxiv.org/abs/2308.06205},
     bibtex_show = {true},
     copyright = {arXiv.org perpetual, non-exclusive license}
   }

2. preprint

   Topological classification of tumour-immune interactions and dynamics

   Yang, Jingjie, Fang, Heidi, Dhesi, Jagdeep, Yoon, Iris H. R., Bull, Joshua A., Byrne, Helen M., Harrington, Heather A., and Grindstaff, Gillian

   2023

   Bib HTML

   @article{yang2023topological,
     title = {Topological classification of tumour-immune interactions and dynamics},
     author = {Yang, Jingjie and Fang, Heidi and Dhesi, Jagdeep and Yoon, Iris H. R. and Bull, Joshua A. and Byrne, Helen M. and Harrington, Heather A. and Grindstaff, Gillian},
     year = {2023},
     abbr = {preprint},
     doi = {10.48550/arXiv.2308.05294},
     html = {https://arxiv.org/abs/2308.05294},
     bibtex_show = {true},
     copyright = {arXiv.org perpetual, non-exclusive license}
   }

3. JACT

   Persistent Extension and Analogous Bars: Data-Induced Relations Between Persistence Barcodes

   Yoon, Hee Rhang, Ghrist, Robert, and Giusti, Chad

   Journal of Applied and Computational Topology 2023

   Bib HTML

   @article{analogous_bars,
     doi = {10.1007/s41468-023-00115-y},
     url = {https://link.springer.com/article/10.1007/s41468-023-00115-y},
     author = {Yoon, Hee Rhang and Ghrist, Robert and Giusti, Chad},
     journal = {Journal of Applied and Computational Topology},
     title = {Persistent Extension and Analogous Bars: Data-Induced Relations Between Persistence Barcodes},
     publisher = {Springer},
     abbr = {JACT},
     html = {https://rdcu.be/c9Z4e},
     bibtex_show = {true},
     year = {2023}
   }

2022

1. preprint

   Hypergraphs for multiscale cycles in structured data

   Barbensi, Agnese, Yoon, Hee Rhang, Madsen, Christian Degnbol, Ajayi, Deborah O., Stumpf, Michael P. H., and Harrington, Heather A.

   2022

   Bib HTML

   @article{hyperTDA,
     doi = {10.48550/ARXIV.2210.07545},
     url = {https://arxiv.org/abs/2210.07545},
     author = {Barbensi, Agnese and Yoon, Hee Rhang and Madsen, Christian Degnbol and Ajayi, Deborah O. and Stumpf, Michael P. H. and Harrington, Heather A.},
     title = {Hypergraphs for multiscale cycles in structured data},
     publisher = {arXiv},
     year = {2022},
     abbr = {preprint},
     html = {https://arxiv.org/abs/2210.07545},
     bibtex_show = {true},
     copyright = {arXiv.org perpetual, non-exclusive license}
   }

2020

1. preprint

   Persistence by Parts: Multiscale Feature Detection via Distributed Persistent Homology

   Yoon, Hee Rhang, and Ghrist, Robert

   2020

   Bib HTML

   @misc{yoon2020persistence,
     title = {Persistence by Parts: Multiscale Feature Detection via Distributed Persistent Homology},
     author = {Yoon, Hee Rhang and Ghrist, Robert},
     abbr = {preprint},
     year = {2020},
     eprint = {2001.01623},
     archiveprefix = {arXiv},
     html = {https://arxiv.org/abs/2001.01623},
     bibtex_show = {true},
     primaryclass = {math.AT}
   }

2019

1. CMB

   Towards an understanding of RNA structural modalities: a riboswitch case study

   Yoon, Hee Rhang, Coria, Aaztli, Laederach, Alain, and Heitsch, Christine

   Computational and Mathematical Biophysics 2019

   Bib HTML

   @article{YoonCoriaLaederachHeitsch,
     author = {Yoon, Hee Rhang and Coria, Aaztli and Laederach, Alain and Heitsch, Christine},
     doi = {doi:10.1515/cmb-2019-0004},
     url = {https://doi.org/10.1515/cmb-2019-0004},
     title = {Towards an understanding of RNA structural modalities: a riboswitch case study},
     journal = {Computational and Mathematical Biophysics},
     abbr = {CMB},
     number = {1},
     volume = {7},
     year = {2019},
     html = {https://www.degruyter.com/document/doi/10.1515/cmb-2019-0004/html},
     bibtex_show = {true},
     pages = {48--63}
   }

2018

1. Ph.D. thesis

   Cellular Sheaves and Cosheaves For Distributed Topological Data Analysis

   Yoon, Hee Rhang

   2018

   Bib HTML

   @phdthesis{Yoon_dissertation,
     title = {Cellular Sheaves and Cosheaves For Distributed Topological Data Analysis},
     abbr = {Ph.D. thesis},
     bibtex_show = {true},
     school = {University of Pennsylvania},
     author = {Yoon, Hee Rhang},
     html = {https://repository.upenn.edu/dissertations/AAI10810230/},
     year = {2018}
   }

2013

1. Coll. Math

   Mancala Matrices

   Taalman, L., Tongen, A., Warren, B., Wyrick-Flax, F., and Yoon, I.

   The College Mathematics Journal 2013

   HTML