publications

2024

2024

1. PNAS

   Tracking the topology of neural manifolds across populations

   Iris H.R. Yoon, Gregory Henselman-Petrusek, Yiyi Yu, and 3 more authors

   Proceedings of the National Academy of Sciences, 2024

   DOI Bib HTML

   @article{YoonPNAS,
     title = {Tracking the topology of neural manifolds across populations},
     author = {Yoon, Iris H.R. and Henselman-Petrusek, Gregory and Yu, Yiyi and Ghrist, Robert and Smith, Spencer and Giusti, Chad},
     year = {2024},
     journal = {Proceedings of the National Academy of Sciences},
     volume = {121},
     number = {46},
     pages = {e2407997121},
     doi = {10.1073/pnas.2407997121},
   }

2. preprint

   Dowker duality, profunctors, and spectral sequences

   Iris H. R. Yoon

   2024

   DOI Bib HTML

   @article{yoonDowker,
     title = {Dowker duality, profunctors, and spectral sequences},
     author = {Yoon, Iris H. R.},
     year = {2024},
     publisher = {arXiv},
     doi = {10.48550/arXiv.2408.13136},
   }

3. Bull Math Biol

   Relational persistent homology for multispecies data with application to the tumor microenvironment

   Bernadette J. Stolz, Jagdeep Dhesi, Joshua A. Bull, and 3 more authors

   Bulletin of Mathematical Biology, 2024

   DOI Bib HTML

   @article{stolz2023relational,
     title = {Relational persistent homology for multispecies data with application to the tumor microenvironment},
     author = {Stolz, Bernadette J. and Dhesi, Jagdeep and Bull, Joshua A. and Harrington, Heather A. and Byrne, Helen M. and Yoon, Iris H. R.},
     year = {2024},
     journal = {Bulletin of Mathematical Biology},
     doi = {10.1007/s11538-024-01353-6},
   }

4. preprint

   Deciphering the diversity and sequence of extracellular matrix and cellular spatial patterns in lung adenocarcinoma using topological data analysis

   2024

   DOI Bib HTML

   @article{yoonLungTDA,
     title = {Deciphering the diversity and sequence of extracellular matrix and cellular spatial patterns in lung adenocarcinoma using topological data analysis},
     author = {},
     year = {2024},
     publisher = {bioRXiv},
     doi = {10.1101/2024.01.05.574362},
   }

2023

2023

1. preprint

   Topological classification of tumour-immune interactions and dynamics

   Jingjie Yang, Heidi Fang, Jagdeep Dhesi, and 5 more authors

   2023

   DOI Bib HTML

   @article{yang2023topological,
     title = {Topological classification of tumour-immune interactions and dynamics},
     author = {Yang, Jingjie and Fang, Heidi and Dhesi, Jagdeep and Yoon, Iris H. R. and Bull, Joshua A. and Byrne, Helen M. and Harrington, Heather A. and Grindstaff, Gillian},
     year = {2023},
     doi = {10.48550/arXiv.2308.05294},
     copyright = {arXiv.org perpetual, non-exclusive license}
   }

2. JACT

   Persistent Extension and Analogous Bars: Data-Induced Relations Between Persistence Barcodes

   Hee Rhang Yoon, Robert Ghrist, and Chad Giusti

   Journal of Applied and Computational Topology, 2023

   DOI Bib HTML

   @article{analogous_bars,
     doi = {10.1007/s41468-023-00115-y},
     url = {https://link.springer.com/article/10.1007/s41468-023-00115-y},
     author = {Yoon, Hee Rhang and Ghrist, Robert and Giusti, Chad},
     journal = {Journal of Applied and Computational Topology},
     title = {Persistent Extension and Analogous Bars: Data-Induced Relations Between Persistence Barcodes},
     publisher = {Springer},
     year = {2023}
   }

2022

2022

1. preprint

   Hypergraphs for multiscale cycles in structured data

   Agnese Barbensi, Hee Rhang Yoon, Christian Degnbol Madsen, and 3 more authors

   2022

   DOI Bib HTML

   @article{hyperTDA,
     doi = {10.48550/ARXIV.2210.07545},
     url = {https://arxiv.org/abs/2210.07545},
     author = {Barbensi, Agnese and Yoon, Hee Rhang and Madsen, Christian Degnbol and Ajayi, Deborah O. and Stumpf, Michael P. H. and Harrington, Heather A.},
     title = {Hypergraphs for multiscale cycles in structured data},
     publisher = {arXiv},
     year = {2022},
     copyright = {arXiv.org perpetual, non-exclusive license}
   }

2020

2020

1. preprint

   Persistence by Parts: Multiscale Feature Detection via Distributed Persistent Homology

   Hee Rhang Yoon, and Robert Ghrist

   2020

   Bib HTML

   @misc{yoon2020persistence,
     title = {Persistence by Parts: Multiscale Feature Detection via Distributed Persistent Homology},
     author = {Yoon, Hee Rhang and Ghrist, Robert},
     year = {2020},
     eprint = {2001.01623},
     archiveprefix = {arXiv},
     primaryclass = {math.AT}
   }

2019

2019

1. CMB

   Towards an understanding of RNA structural modalities: a riboswitch case study

   Hee Rhang Yoon, Aaztli Coria, Alain Laederach, and 1 more author

   Computational and Mathematical Biophysics, 2019

   DOI Bib HTML

   @article{YoonCoriaLaederachHeitsch,
     author = {Yoon, Hee Rhang and Coria, Aaztli and Laederach, Alain and Heitsch, Christine},
     doi = {doi:10.1515/cmb-2019-0004},
     url = {https://doi.org/10.1515/cmb-2019-0004},
     title = {Towards an understanding of RNA structural modalities: a riboswitch case study},
     journal = {Computational and Mathematical Biophysics},
     number = {1},
     volume = {7},
     year = {2019},
     pages = {48--63}
   }

2018

2018

1. Ph.D. thesis

   Cellular Sheaves and Cosheaves For Distributed Topological Data Analysis

   Hee Rhang Yoon

   University of Pennsylvania, 2018

   Bib HTML

   @phdthesis{Yoon_dissertation,
     title = {Cellular Sheaves and Cosheaves For Distributed Topological Data Analysis},
     school = {University of Pennsylvania},
     author = {Yoon, Hee Rhang},
     year = {2018}
   }

2013

2013

1. Coll. Math

   Mancala Matrices

   L. Taalman, A. Tongen, B. Warren, and 2 more authors

   The College Mathematics Journal, 2013

   DOI HTML